Publications

 Jung, Y. H., Bixler, B. J., Ruiz, D., Wang, H. V., Linsenbaum, H., Xiang, J-F., Shafik, A. M., Jin, P., and Corces, V. G. (2020). Transgenerational inheritance of BPA-induced obesity correlates with transmission of new CTCF sites in the Fto gene. BioRxiv doi: https://doi.org/10.1101/2020.11.20.391672.

 

Nichols, M. H. and Corces, V. G. (2020). Principles of 3D Compartmentalization of the Human Genome. BioRxiv doi: https://doi.org/10.1101/2020.11.22.393496.

 

Klein, K. N., Zhao, P. A., Lyu, X., Bartlett, D. A., Singh, A., Tasan, I., Zhou, X., Leung, D., Zhao, H., Dalton, S., Corces, V. G., and Gilbert, D. M. (2020). Replication timing maintains the global epigenetic state in human cells. BioRxiv doi: https://doi.org/10.1101/2019.12.28.890020.

 

Xiang, J-F., and Corces, VG. (2021). Regulation of 3D chromatin organization by CTCF. Curr Opin  Genet Dev 67, 33-40.

 

Fresán, U., Rodríguez-Sánchez, M. A., Reina, O., Corces, V. G., and Espinàs, M. L. (2020). Haspin kinase modulates nuclear architecture and Polycomb-dependent gene silencing. PLOS Genet 16(8):e1008962. doi: 10.1371/journal.pgen.1008962.

 

Kremsky, I., and Corces, V.G. (2020). Protection from DNA re-methylation by transcription factors in primordial germ cells and pre-implantation embryos can explain trans-generational epigenetic inheritance. Genome Biology 21(1):118. doi:10.1186/s13059-020-02036-w.

 

Rowley, M. J., Poulet, A., Nichols, M. H., Bixler, B. J., Sanborn, A. L., Brouhard, E. A., Hermetz, K., Linsenbaum, H., Csankovszki, G., Lieberman Aiden, E., and Corces, V. G. (2020). Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals. Genome Res 30, 447-458.

 

Martini, M., Corces, V. G., and Rissman, E. F. (2020). Epigenetic mechanisms that promote transgenerational actions of endocrine disrupting chemicals: Applications to behavioral neuroendocrinology. Hormones and Behavior 119: 104677. doi: 10.1016/j.yhbeh.2020.104677.

 

Ricci W. A., Lu Z., Ji L., Marand A. P., Ethridge C. L., Murphy N. G., Noshay J. M., Galli M., Mejía-Guerra M. K., Colomé-Tatché M., Johannes F., Rowley M. J., Corces V. G., Zhai J., Scanlon M. J., Buckler E. S., Gallavotti A., Springer N. M., Schmitz R. J., Zhang X. (2019). Widespread long-range cis-regulatory elements in the maize genome. Nat Plants 5, 1237-1249.

 

Goodnight, A. V., Kremsky, I., Khampang, S., Jung, Y. H., Billingsley, J. M., Bosinger, S. E., Corces, V. G.*, and Chan, A. W. S.* (2019). Chromatin Accessibility and Transcription Dynamics During In Vitro Astrocyte Differentiation of Huntington’s Disease Monkey Pluripotent Stem Cells. Epigenetics and Chromatin 12(1):67. doi: 10.1186/s13072-019-0313-6. (*corresponding authors).

 

Fernandez-Albert, J., Lipinski, M., Lopez-Cascales, M. T., Rowley, M. J., Martin-Gonzalez, A. M., Beatriz del Blanco, Corces, V. G., and Barco, A. (2019). Inmediate and deferred epigenomic signatures of neuronal activation in mouse hippocampus. Nat Neurosci 22, 1718-1730.

 

Gutierrez-Perez, I., Rowley, M. J., Lyu, X., Valadez-Graham, V., Ballesta-Illan, E., Lopez-Atalaya, J. P., Kremsky, I., Vallejo, D., Caparros, E., Corces, V. G.*, and Dominguez, M*. (2019). Ecdysone-induced 3D chromatin reorganization involves active enhancers bound by Pipsqueak and Polycomb. Cell Reports 28, 2715-2727. (*corresponding authors).

 

Wang, H.-L. V. and Corces, V. G. (2019). Seeing is believing: ORCA allows visualization of 3D genome organization at single-cell resolution. Biochemistry DOI: 10.1021/acs.biochem.9b00611.

 

Dileep, V., Wilson, K. A., Marchal, C., Lyu, X., Zhao, Li, B., Poulet, A., Barlett, D. A., Rivera-Mulia, J. C., Qin, Z., Robins, A. J., Schulz, T. C. Kulik, M. J., Dalton, S., Corces, V. G., and Gilbert, D. M. (2019). Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment. Stem Cell Reports 13, 193-206.

 

Jung, Y. H., Kremsky, I. J., Gold, H. B., Rowley, M. J., Punyawai, K., Buonanotte, A., Lyu, X., Bixler, B. J., Chan, A. W. S., and Corces, V. G. (2019). Maintenance of CTCF- and transcription factor-mediated interactions from the gametes to the early mouse embryo. Mol Cell 75, 154-171.

 

Rowley, M. R., Lyu, X., Rana, V., Ando-Kuri, M., Karns, R., Bosco, G., and Corces, V. G. (2019). Condensin II Counters Cohesin and RNA Polymerase II in the Establishment of 3D Chromatin Organization. Cell Reports 26, 2890-2903.

 

Jung Y. H. and Corces, V. G. (2019). Pach-ing it in: The peculiar organization of mammalian pachytene chromosomes. Mol Cell 73, 392-394.

 

Ruiz, J. L., Yerbanga, R. S., Lefèvre,T., Ouedraogo, J. B., Corces, V. C., and Gómez-Díaz, E, (2019). Chromatin changes in Anopheles gambiae induced by Plasmodium falciparum infection. Epigenetics and Chromatin https://doi.org/10.1186/s13072-018-0250-9.

 

Xu, C. and Corces, V. G. (2019). Resolution of the DNA methylation state of single CpG dyads using in silico Strand Annealing and WGBS data. Nature Protocols 14, 202-216.

 

Lyu, X. and Corces, V. G. (2019). Engineering 3D Genome Organization. Cell Research 29, 1-3.

 

Rowley, M. J., and Corces, V. G. (2018). Organizational Principles of 3D Genome Architecture. Nat Rev Genet 19, 789-800.

 

Nichols, M. H. and Corces, V. G. (2018). A Tethered Inchworm Model of SMC DNA Translocation. Nat Struct Mol Biol 25, 906-910.

 

Lyu, X., Rowley, M. J., and Corces, V. G. (2018). Architectural proteins and pluripotency factors cooperate to orchestrate the transcriptional response of hESCs to temperature stress. Mol Cell 71, 940-955.

 

Gold, H. B., Jung, Y. H., and Corces, V. G. (2018). Not just heads and tails: the complexity of the sperm epigenome. J Biol Chem doi: 10.1074/jbc.R117.001561.

 

Xu, C. and Corces, V. G. (2018). Nascent DNA methylome mapping reveals inheritance of hemimethylation at CTCF-cohesin sites. Science 359, 1166-1170.

 

Arzate-Mejia, R. G., Recillas-Targa, F., and Corces, V. G. (2018). Developing in 3D: The role of CTCF in cell differentiation. Development 145, doi:10.1242/dev.137729.

 

Xu, C. and Corces, V. G. (2018). Genome-wide Mapping of Protein-DNA Interactions on Nascent Chromatin. Methods Mol Biol 1766, 231-238.

 

Ando-Kuri, M., Rivera, I. S. M., Rowley, M. J., and Corces, V. G. (2018). Analysis of chromatin interactions mediated by specific architectural proteins in Drosophila cells. Methods Mol Biol 1766, 239-256.

 

Rowley, M. J., Nichols, M. H., Lyu, X., Ando-Kuri, M., Rivera, S. M., Hermetz, K., Wang, P., Ruan, Y., and Corces, V. G. (2017). Evolutionarily Conserved Principles Predict 3D Chromatin Organization. Mol Cell 67, 837-852.

 

Hashimoto, H., Wang, D., Zhang, X., Corces, V. G., and Cheng, X. (2017). Structural basis for the versatile and methylation-dependent binding of CTCF to DNA. Mol Cell 66, 711-720.

 

Jung, Y. H., Sauria, M. E. G., Lyu, X., Cheema, M. S., Ausio, J., Taylor, J., and Corces. V. G. (2017). Chromatin states in mouse sperm correlate with embryonic and adult regulatory landscapes. Cell Reports 18, 1366-1382.

 

Gómez-Díaz, E., Yerbanga, R. S., Lefèvre, T., Cohuet, A., Rowley, M. J., Ouedraogo, J. B., and Corces, V. G. (2017). Epigenetic regulation of Plasmodium falciparum clonally variant gene expression during development in An. gambiae. Sci. Rep. 7, 40655; doi: 10.1038/srep40655.

 

Cubeñas-Potts, C., Rowley, M. J., Lyu, X., Li, G., Lei, E. P., and Corces, V. G. (2017). Different Enhancer Classes in Drosophila Bind Distinct Architectural Proteins and Mediate Unique Chromatin Interactions and 3D Architecture. Nucleic Acids Res 45, 1714-1730.

 

Rowley, M. J., and Corces, V. G. (2016). Capturing Native Interactions: Intrinsic Methods to Study Chromatin Conformation. Molecular Systems Biology, doi: 10.15252/msb.20167438.

 

Rowley, M. J. and Corces, V. G. (2016). Minute-made data analysis: tools for rapid interrogation of Hi-C contacts. Molecular Cell 64, 9-11.

 

Beagan, J. A., Gilgenast, T. G., Kim, J., Plona, Z., Norton, H. K., Hu, G., Hsu, S. C., Shields, E. J., Lyu, X., Apostolou, E., Hochedlinger, K., Corces, V. G., Dekker, J., and Phillips-Cremins J. E. (2016). Local genome topology can exhibit cell of origin architectural memory during somatic cell reprogramming. Cell Stem Cell 18, 611-624.

 

Corces, M. R. and Corces, V. G. (2016). The three-dimensional cancer genome. Curr Opin Genet Dev 5, 1-7.

 

Rowley, M. J. and Corces, V. G. (2016). The Three-dimensional Genome: Principles and Roles of Long-Distance Interactions. Curr Opin. Cell Biol. 40, 8-14.

 

Xu, C., and Corces, V. G. (2015). Towards a predictive model of chromatin 3D organization. Sem. Cell Dev. Biol. http://dx.doi.org/10.1016/j.semcdb.2015.11.013.

 

Cubeñas-Potts, C. and Corces, V. G. (2015). Topologically Associating Domains: An invariant framework or a dynamic scaffold. Nucleus 6, 1-5.

 

Sauria, M. E., Phillips-Cremins, J. E., Corces, V. G., and Taylor, J. (2015). HiFive: a tool suite for easy and efficient HiC and 5C data analysis. Genome Biol. 16:237 doi:10.1186/s13059-015-0806-y.

 

Van Bortle, K., Nichols, M. H., Ramos, E., and Corces, V. G. (2015). Integrated tRNA, transcript, and protein profiles in response to steroid hormone signaling. RNA 21, 1807-1917.

 

Nichols, M. H., and Corces, V. G. (2015). A CTCF Code for 3D Genome Architecture. Cell 162, 703-705.

 

Van Bortle, K., Peterson, A. J., Takenaka, N., O’Connor, M. B. and Corces, V. G. (2015). CTCF-dependent co-localization of canonical Smad signaling factors at architectural protein binding sites in D. melanogaster. Cell Cycle 14, 2677-2687.

 

Cubeñas-Potts, C. and Corces, V. G. (2015). Architectural Proteins, Transcription, and the Three-dimensional Organization of the Genome. FEBS Lett 589, 2923-2930.

 

Li, L., Lyu, X., Hou, C., Takenaka, N., Nguyen, H. Q., Ong, C.-T., Hu, M., Lei, E. P. Bosco, G., Qin, Z. S., and Corces, V. G. (2015). Widespread rearrangement of 3D chromatin organization underlies Polycomb-mediated stress-induced silencing. Molecular Cell 58, 1-16.

 

Gómez-Díaz, E. and Corces, V. G. (2014). Architectural proteins: regulators of 3D genome organization in cell fate. Trends Cell Biol. 24, 703-711.

 

Gómez-Díaz, E., Rivero, A., Chandre, F. and Corces, V. G. (2014). Insights into the epigenomic landscape of the human malaria vector Anopheles gambiae. Frontiers in Genetics, doi: 10.3389/fgene.2014.00277.

 

Van Bortle, K., Nichols, M. H., Li, L., Ong, C.-T., Takenaka, N., Qin, Z. S. and Corces, V. G. (2014). Insulator function and topological domain border strength scale with architectural protein occupancy. Genome Biology 15:R82 doi:10.1186/gb-2014-15-5-r82.

 

Van Bortle, K., and Corces, V. (2014). Lost in Transition: Dynamic Enhancer Organization across Naive and Primed Stem Cell States. Cell Stem Cell 14, 693-694.

 

Levens, D. and Corces, V. (2014). Genome architecture and expression: The nucleus, top and bottom. Curr. Opin. Genet. Dev. 25, v-vii.

 

Ong, C.-T. and Corces, V. G. (2014). CTCF: an architectural protein bridging genome topology and function. Nat Rev Genet 15, 233-246.

 

Ong, C.-T., Van Bortle, K., Ramos, E., and Corces, V. G. (2013). Poly(ADP-ribosyl)ation regulates insulator function and intra-chromosomal interactions in Drosophila. Cell 155, 148-159.

 

Kellner, W. A., Ramos, E., Van Bortle, K., Takenaka, N. and Corces, V. G. (2013). Distinct isoforms of the Drosophila Brd4 homologue are present at enhancers, promoters and insulator sites. Nucleic Acids Res, 1-10.

 

Timmerman, C., Suppiah, S., Gurudatta, B. V., Yang, J., Banerjee, C., David J. Sandstrom, D. J., Corces, V. G., and Sanyal, S. (2013). The Drosophila transcription factor Adf-1(nalyot) regulates dendrite growth by controlling FasII and Staufen expression downstream of CaMKII and neural activity. J. Neuroscience 33, 11916-11931.

 

Phillips-Cremins, J. E, Sauria, M. E. G., Sanyal, A., Gerasimova, T. I., Lajoie, B. R., Bell, J. S. K, Ong, C.-T., Hookway, T. A., Guo, C., Sun, Y., Bland, M. J., Wagstaff, W., Dalton, S., McDevitt, T. C., Sen, R., Dekker, J., Taylor, J., and Corces, V. G. (2013). Architectural protein subclasses shape 3-D organization of genomes during lineage commitment. Cell 153, 1-15.

 

Phillips-Cremins, J. E. and Corces, V. G. (2013). Chromatin insulators: linking genome organization to cellular function. Molecular Cell 50, 461-474.

 

Gurudatta, B. V., Yang, J., Donlin-Asp, P. G. and Corces, V.G. (2013). Dynamic changes in the genomic localization of DNA Replication-Related Element Binding factor during the cell cycle. Cell Cycle 12, 1-11.

 

Van Bortle, K. and Corces, V.G. (2013). The role of chromatin insulators in nuclear architecture and genome function. Curr Opin Genet Dev 23, 212-218.

 

Van Bortle, K., and Corces, V. G. (2013). Spinning the web of cell fate. Cell, 152, 1213-1217.

 

Yang, J., Sung, E. R., Donlin-Asp, P. G. and Corces, V.G. (2013). A subset of Drosophila Myc sites remain associated with mitotic chromosomes co-localized with insulator proteins. Nat. Commun 4:1464 doi: 10.1038/ncomms2469.

 

Rohrbaugh, M., Clore, A., Davis, J., Johnson, S., Jones, B., Jones, K., Kim, J., Kithuka, B., Lunsford, K., Mitchell, J., Mott, B., Ramos, E., Tchedou, M. R., Acosta, G., Araujo, M., Baraka, G. V., Cushing, S., Duffy, G., Graves, F., Griffin, K., Jackson, D., Jaimes, D., Jamison, K., Jones, K., Kelley, D., Kilgore, M., Laramore, D., Le, T., Mazhar, B., Mazhar, M. M., McCrary, B., Miller, T., Moreland, C., Mullins, A., Munye, E., Okoorie, S., Pittman, E., Roberts, N., Rose, D., Rowland, A., Shagarabi, A., Smith, J., Stallworth, T., Stroud, N., Sung, E., Sung, K., Takenaka, N., Torre, E., Veira, J., Vu, K., Wagstaff, W., Wood, A. M., Wu, K., Yang J., and Corces, V. G. (2013). Identification and characterization of proteins involved in nuclear organization using Drosophila GFP protein trap lines. PLoS ONE 8(1): e53091. doi:10.1371/journal.pone.0053091.

 

Hou, C., Li, L., Qin, Z. and Corces, V. G. (2012). Gene density, transcription and insulators contribute to partitioning the Drosophila genome into physical domains. Molecular Cell 48, 471-484.

 

Van Bortle, K., Ramos, E. Takenaka, N., Yang, J. Wahi, J. E. and Corces, V. G. (2012). Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains. Genome Research 22, 2176-2187.

 

Yang, J., Ramos, E. and Corces, V.G. (2012). The BEAF-32 insulator coordinates genome organization and function during the evolution of Drosophila species. Genome Research 22, 2199-2207.

 

Van Bortle, K. and Corces, V. G. (2012). Nuclear organization and genome function. Ann Rev Cell Dev Biol 28, 163-187.

 

Van Bortle, K., and Corces, V. G. (2012). tDNA insulators and the emerging role of TFIIIC in genome organization. Transcription 3, 1-8.

 

Yang, J. and Corces, V. G. (2012). Insulators, long range interactions, and genome function. Curr Opin Genet Dev 22, 86-92.

 

Ong, C.-T. and Corces, V. G. (2012). Enhancers: Emerging roles in cell fate specification. EMBO Reports 13, 423-430.

 

Gurudatta, B. V., Ramos, E. and Corces, V. G. (2012). The BEAF insulator regulates genes involved in cell polarity and neoplastic growth. Dev Biol 369, 124-132.

 

Yang, J. and Corces, V. G. (2012). Chromatin insulators and epigenetic inheritance in health and disease. In “Toxicology and Epigenetics”, S. C. Sahu (ed). Wiley-Blackwell.

 

Hou, C. and Corces, V. G. (2012). Throwing Transcription for a Loop: Expression of the genome in the 3D Nucleus. Chromosoma 121, 107-116.

 

Yang, J. and Corces, V. G. (2012). Insulators, long range interactions, and genome function. Curr Opin Genet Dev 22, 86-92.

 

Kellner, W. A., Ramos, E., Van Bortle, K., Takenaka, N. and Corces, V. G. (2012). Genome-wide Phosphoacetylation of Histone H3 at Drosophila Enhancers and Promoters. Genome Research 22, 1081-1088.

 

Ramos, E., Torre, E. A., Bushey, A. M., Gurudatta, B. V. and Corces, V. G. (2011). DNA Topoisomerase II modulates insulator function in Drosophila. PLoS ONE 6(1): e16562. doi:10.1371/journal.pone.0016562.

 

Ong, C.-T, and Corces, V.G. (2011). Enhancer function: new insights into the regulation of tissue-specific gene expression. Nat. Rev. Genet. 12, 283-293.

 

Yang, J. and Corces, V. G. (2011). Chromatin insulators: a role in nuclear organization and gene expression. Adv Cancer Res 110, 43-76.

 

Wood, A. M., Van Bortle, K., Ramos, E., Takenaka, N., Rohrbaugh, M., Jones, B. C., Jones, K. C. and Corces, V. G. (2011). Regulation of chromatin organization and inducible gene expression by a Drosophila insulator. Molecular Cell 44, 29–38.

 

Gurudatta, B. V. and Corces, V. G. (2011) Wt1 flip-flops chromatin in a CTCF domain. Dev Cell 21, 389-390.

 

Rohrbaugh, M. and Corces, V. G. (2011). Opening pathways for underrepresented high school students to biomedical research careers: The Emory University RISE Program. Genetics 189, 1135-1143.

 

Karam, C. S., Kellner, W. A., Clemmons, A. W. and Corces, V. G. (2010). 14-3-3 mediates histone cross-talk during transcription elongation in Drosophila. PLoS Genetics 6, e1000975.

 

Hou, C and Corces, V. G. (2010). Insulators and imprinting from flies to mammals. BMC Biology, 8:104.

 

Hou, C. and Corces, V. G. (2010). Nups take leave of the nuclear envelope to regulate transcription. Cell 140, 306-308.

 

Ong, C.-T. and Corces, V. G. (2009). Insulators as mediators of intra- and inter-chromosomal interactions: a common evolutionary theme. J. Biology 8, 73.1-73.4.

 

Gurudatta, B. V. and Corces, V. G. (2009). Chromatin insulators: lessons from the fly. Brief Funct Genomic Proteomic 8, 276-282.

 

Phillips, J. E. and Corces, V. G. (2009). CTCF: Master weaver of the genome. Cell 137, 1194-1211.

 

Bushey, A. M., Ramos, E. and Corces, V. G. (2009). Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions. Genes Dev. 23, 1338-1350.

 

Ong, C. T. and Corces, V. G. (2008). Modulation of CTCF insulator function by transcription of a noncoding RNA. Dev. Cell 15, 489-490.

 

Bushey, A. M., Dorman, E. R. and Corces, V. G. (2008). Chromatin insulators: regulatory mechanisms and epigenetic inheritance. Mol. Cell 32, 1-9.

 

Labrador, M., Sha, K., Li, A. and Corces, V. G. (2008). Insulator and Ovo proteins determine the frequency and specificity of insertion of the gypsy retrotransposon in Drosophila melanogaster. Genetics 180, 1367-1378.

 

Brandt, T. and Corces, V. G. (2008). The Lawc protein is required for proper transcription by RNA polymerase II in Drosophila. Molec. Genet. Genomics 280, 385-396.

 

Gerasimova T. I., Lei E. P., Bushey A. M. and Corces V.G. (2007). Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila. Mol Cell. 28, 761-772.

 

Ivaldi, M. S, Karam, C.S. and Corces V. G. (2007). Phosphorylation of histone H3 at Ser10 facilitates RNA polymerase II release from promoter-proximal pausing in Drosophila. Genes Dev. 21, 2818-2831.

 

Dorman, E. R, Bushey, A. M. and Corces, V. G. (2007). The role of insulator elements in large-scale chromatin structure in interphase. Semin Cell Dev Biol. 18, 682-90.

 

Lei, E. P. and Corces, V. G. (2006). RNA interference machinery influences the nuclear organization of a chromatin insulator. Nat. Genet. 38, 936-941.

 

Capelson, M. and Corces, V. G. (2006). SUMO conjugation attenuates the activity of the gypsy chromatin insulator. EMBO J. 25, 1906-1914.

 

Lei, E. P. and Corces, V. G. (2006). A long distance relationship between RNAi and Polycomb. Cell 124, 886-888.

 

Ramos, E., Ghosh, D., Baxter, E. and Corces, V. G. (2006). Genomic organization of gypsy chromatin insulators in Drosophila melanogaster. Genetics 172, 2337-2349.

 

Capelson, M. and Corces, V. G. (2005). The ubiquitin ligase dTopors directs the nuclear organization of a chromatin insulator. Mol. Cell 20, 105-116.

 

Swaminathan, J., Baxter, E. and Corces, V. G. (2005). The role of histone H2Av variant replacement and histone H4 acetylation in the establishment of Drosophila heterochromatin. Genes Dev. 19, 65–76.

 

Nowak, S. J. and Corces, V. G. (2004). Phosphorylation of histone H3. A balancing act between chromosome condensation and transcriptional activation. Trends Genet. 20, 214-220.

 

Capelson, M. and Corces, V. G. (2004). Boundary elements and nuclear organization. Biol. Cell 96, 617-629.

 

Pai, C.-Y., Lei, E. P., Ghosh, D. and Corces, V. G. (2004). The centrosomal protein CP190 is also a component of the gypsy insulator. Mol. Cell 16, 737-748.

 

Labrador, M. and Corces, V. G. (2003). Phosphorylation of histone H3 during transcriptional activation depends on promoter structure. Genes Dev. 17, 43-48.

 

Nowak, S. J. and Corces, V. G. (2003). Protein phosphatase 2A activity affects histone H3 phosphorylation and transcription in Drosophila melanogaster. Mol. Cell. Biol. 23, 6129-6138.

 

Byrd, K. and Corces, V. G. (2003). Visualization of chromatin domains created by the gypsy insulator of Drosophila. J. Cell Biol. 162, 565-574.

 

Labrador , M. and Corces, V. G. (2003). Extensive exon reshuffling over evolutionary time coupled to trans-splicing in Drosophila. Genome Res. 13, 2220-2228.

 

Mongelard, F., Labrador, M., Baxter, E. M., Gerasimova, T. I. and Corces, V. G. (2002). Trans-splicing as a novel mechanism to explain interallelic complementation in Drosophila. Genetics 160, 1481-1487.

 

Pai, C-Y. and Corces, V. G. (2002). The nuclear pore complex and chromatin boundaries. Trends Cell Biol. 12, 452-455.

 

Labrador, M. and Corces, V. G. (2002). Setting the boundaries of chromatin domains and nuclear organization. Cell 111, 151-154.

 

Labrador, M., Mongelard, F., Baxter, E. M., Plata-Rengifo, P., Corces, V. G. and Gerasimova, T. I. (2001). Protein encoding by both DNA strands. Nature 409, 1000.

 

Mongelard, F. and Corces, V. G. (2001). Two insulators are not better than one. Nat. Struct. Biol. 8, 192-194.

 

Ghosh, D., Gerasimova, T. I. and Corces, V. G. (2001). Interactions between the Su(Hw) and Mod(mdg4) proteins required for insulator function. EMBO J. 20, 2518-2527.

 

Labrador, M. and Corces, V. G. (2001). Protein determinants of insertional specificity for the Drosophila gypsy retrovirus. Genetics 158, 1101-1110.

 

Gerasimova, T. I., and Corces, V. G. (2001). Chromatin Insulators and Boundaries: Effects on Transcription and Nuclear Organization. Annu. Rev. Genet. 35, 193-208.

 

Chen, S. and Corces, V. G. (2001). The gypsy insulator of Drosophila affects chromatin structure in a directional manner. Genetics 159, 1649-1658.

 

Gerasimova, T. I., Byrd, K. and Corces, V. G. (2000). A chromatin insulator determines the nuclear localization of DNA. Mol. Cell 6, 1025-1035.

 

Nowak, S. J. and Corces, V. G. (2000). Phosphorylation of histone H3 correlates with transcriptionally active loci. Genes Dev. 14, 3003-3013.

 

Corces, V. G. and Felsenfeld, G. (2000). Chromatin Boundaries. In “Chromatin Structure and Gene Expression”, S. C. R. Elgin and J. L. Workman, eds., pp 278-299. Oxford University Press.

 

Zorin, I. D., Gerasimova, T. I. and Corces, V. G. (1999). The lawc gene is a new member of the trithorax group that affects the function of the gypsy insulator of Drosophila. Genetics 152, 1045-1055.

 

Slusarski, D. C. and Corces, V. G. (1999). Calcium imaging in cell-cell signalling. In “Methods in Molecular Biology, vol 135: Developmental Biology Protocols”, R. S. Tuan and C. W. Lo (eds) pp. 253-261, Humana Press Inc, Totowa, NJ.

 

Gerasimova, T. I. and Corces, V. G. (1998). Polycomb- and trithorax-group proteins mediate the function of a chromatin insulator. Cell 92, 511-521.

 

Gerasimova, T. I. and Corces, V. G. (1998). Domains and boundaries in chromosomes. In “Genomic Imprinting”, R. Ohlsson (ed), pp 229-249. Springer-Verlag.

 

Dej, K., Gerasimova, T. I., Corces, V. G. and Boeke, J. D. (1998). A hotspot for the Drosophila gypsy retroelement in the ovo locus. Nucleic Acids Res. 26, 4019-4025.

 

Corces, V. G. and Gerasimova, T. I. (1997). Chromatin domains and boundary elements. In “Nuclear Organization, Chromatin Structure and Gene Expression”. R. van Driel and A. P. Otte, eds. Oxford University Press, pp 83-98.

 

Gdula, D. A., and Corces, V. G. (1997). Functional domains of the su(Hw) protein that mediate the silencing effect of mod(mdg4) mutations. Genetics 145, 153-161.

 

Evgen’ev, M. B., Zelentsova, H., Shostak, N., Kozitsina, M., Barskyi, V., Lankenau, D.-H., and Corces, V. G. (1997). A new class of transposable elements and its possible role in hybrid dysgenesis in Drosophila virilis. Proc. Natl. Acad. Sci. USA 94, 196-201.

 

Leshko-Lindsay, L. and Corces, V. G. (1997). The role of selectins in Drosophila eye and bristle development. Development 124, 169-180.

 

Georgiev, P., Tikhomirova, T., Yelagin, V., Belenkaya, T., Gracheva, E., Parshikov, A., Evegen’ev, M. B., Samarina, O. P., and Corces, V. G. (1997). Insertions of hybrid P elements in the yellow gene of Drosophila cause a large variety of mutant phenotypes. Genetics 146, 583-594.

 

Song, S. U., Kurkulos, M., Boeke, J. D. and Corces, V. G. (1997). Infection of the germ line by retroviral particles produced in the follicle cells: a possible mechanism for the mobilization of the gypsy retroelement of Drosophila. Development 124, 2789-2798.

 

Labrador, M. and Corces, V. G. (1997). Transposable elements-host interactions: Regulation of insertion and excision. Annu. Rev. Genet. 31, 381-404.

 

Slusarski, D. C., Corces, V. G and Moon, R. T. (1997). Interaction of Wnt and a Frizzled homologue triggers G-protein-linked phosphatidylinositol signalling. Nature 390, 410-413.

 

Bishop, J. G., and Corces, V. G. (1996). Dras2. In "Guidebook to the small GTPases". M. Zerial and L. A. Huber, eds. Oxford University Press.

 

Gerasimova, T. I., and Corces, V. G. (1996). Boundary and insulator elements in chromosomes. Curr. Opin. Genet. Dev. 6, 185-192.

 

Lankenau, D.-H., Corces, V. G., and Engels, W. R. (1996). Comparison of targeted gene replacement frequencies in Drosophila at the forked and white loci. Mol. Cell. Biol. 16, 3535-3544.

 

Gdula, D. A., Gerasimova, T. I., and Corces, V. G. (1996). Genetic and molecular analysis of the gypsy chromatin insulator of Drosophila. Proc. Natl. Acad. Sci. USA 93, 9378-9383.

 

Smith, P. A., and Corces, V. G. (1995). The suppressor of Hairy-wing protein regulates the tissue-specific transcription of the Drosophila gypsy retrotransposon. Genetics 139, 215-228.

 

Georgiev, P. G., and Corces, V. G. (1995).  The su(Hw) protein bound to gypsy sequences in one chromosome can repress enhancer-promoter interactions in the paired gene located in the other homolog. Proc. Natl. Acad. Sci. USA 92, 5184-5188.

 

Gerasimova, T., Gdula, D. A., Smith, P. A., Gerasimov, D. V., and Corces, V. G. (1995). A Drosophila protein that imparts directionality on a chromatin insulator is an enhancer of position-effect variegation. Cell 82, 587-597.

 

Corces, V. G. (1995). Chromatin insulators. Keeping enhancers under control. Nature 376, 462-463.

 

Petersen, N. S., Lankenau, D.-H., Mitchell, H. K., Young, P., and Corces, V. G. (1994). Forked proteins are components of fiber bundles present in developing bristles of Drosophila melanogaster. Genetics 136, 173-182.

 

Lankenau, S., Corces, V. G., and Lankenau, D.-H. (1994).  The Drosophila micropia retrotransposon encodes a testis-specific antisense RNA complementary to reverse transcriptase. Mol. Cell. Biol. 14, 1764-1775.

 

Tanda, S., Mullor, J. L., and Corces, V. G. (1994).  The Drosophila tom retrotransposon encodes an envelope protein. Mol. Cell. Biol. 14, 5392-5401.

 

Pélisson, A., Song, S. U., Prudhomme, N., Smith, P. A., Bucheton, A., and Corces, V. G. (1994). Gypsy transposition correlates with the production of a retroviral envelope-like protein under the tissue-specific control of the Drosophila flamenco gene. EMBO J. 13, 4401-4411.

 

Song, S. U., Kurkulos, M., Gerasimova, T., Boeke, J. D., and Corces, V. G. (1994). An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus. Genes Dev 8, 2046-2057.

 

Tanda, S. Leshko, L. A., and Corces, V. G. (1993). Genetic and molecular analysis of Optic morphology mutants. In "Drosophila ananassae. Genetic and Biological aspects", (Y. B. Tobari, ed.), Japan Scientific Society Press Tokyo), and Karger (Basel), pp. 89-119.

 

Hoover, K. K., Chien, A. J., and Corces, V. G. (1993). Effects of transposable elements on the expression of the forked gene of Drosophila melanogaster. Genetics 135, 507-526.

 

Harrison, D. A., Gdula, D. A., Coyne, R. S., and Corces, V. G. (1993).  A leucine zipper domain of the suppressor of Hairy-wing protein mediates its repressive effect on enhancer function.  Genes Dev. 7, 1966-1978.

 

Harrison, D. A., Mortin, M. A., and Corces, V. G. (1992). The RNA polymerase 15 kilodalton subunit is essential for viability in Drosophila melanogaster. Mol. Cell. Biol. 12, 928-935.

 

Smith, P. A., and Corces, V. G. (1992). The su(Hw) binding region is required for gypsy mutagenesis. Molec. Gen. Genet. 233, 65-70.

 

Evgen'ev, M. B., Corces, V. G., and Lankenau, D.-H. (1992). The Ulysses transposable element of Drosophila shows high structural similarities to functional domains of retroviruses. J. Mol. Biol. 225, 917-924.

 

Geyer, P. K., and Corces, V. G. (1992). DNA position-specific repression of transcription by a Drosophila Zn finger protein. Genes Dev. 6, 1865-1873.

 

Hoover, K. K., Gerasimova, T. I., Chien, A. J., and Corces, V. G. (1992). Dominant effects of suppressor of Hairy-wing mutations on gypsy-induced alleles of forked and cut in Drosophila melanogaster. Genetics 132, 691-697.

 

Corces, V. G. , and Geyer, P. K. (1991). Interactions of retrotransposons with the host genome: the case of the gypsy element of Drosophila. Trends in Genetics 7, 86-90.

 

Tanda, S., and Corces, V. G. (1991). Retrotransposon-induced overexpression of a homeobox gene causes defects in eye morphogenesis in Drosophila. EMBO J. 10, 407-417.

 

Geyer, P. K., Chien, A., Corces, V. G., and Green, M. M. (1991). Mutations in the suppressor of sable gene affect RNA processing in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA, 88, 7116-7120.

 

Smith, P. A., and Corces, V. G. (1991). Drosophila transposable elements: mechanisms of mutagenesis and interactions with the host genome. Advan. Genet. 29, 229-300.

 

Bishop, J. G., and Corces, V. G. (1990). The nucleotide sequence of a Drosophila melanogaster enolase gene. Nucleic Acids Res. 18, 191.

 

Geyer, P. K., Green, M. M., and Corces, V. G. (1990). Tissue-specific transcriptional enhancers may act in trans on the gene located in the homologous chromosome: the molecular basis of transvection in Drosophila. EMBO J. 9, 2247-2256.

 

Spana, C., and Corces, V. G. (1990). DNA bending is a determinant of binding specificity for a Drosophila zinc finger protein. Genes Dev. 4, 1505-1515.

 

Scheinker, V. S., Lozovskaya, E. R., Bishop, J. G., Corces, V. G., and Evgen'ev, M. B. (1990). A long terminal repeat-containing retrotransposon is mobilized during hybrid dysgenesis in Drosophila virilis. Proc. Natl. Acad. Sci. USA 87, 9615-9619.

 

Harrison, D. A., Geyer, P. K., Spana, C., and Corces, V. G. (1989). The gypsy retrotransposon of Drosophila melanogaster: mechanisms of mutagenesis and interaction with the suppressor of Hairy-wing locus. Dev. Genetics 10, 239-248.

 

Boeke, J., and Corces, V. G. (1989). Transcription and reverse transcription in retrotransposons. Ann. Rev. Microbiology 43, 403-434.

 

Geyer, P. K., Green, M. M., and Corces, V. G. (1988). Molecular basis of transposable element-induced mutations in Drosophila melanogaster. In "Eukaryotic Transposable Elements as Mutagenic Agents (M. E. Lambert, J. F. McDonald, and J. B. Weinstein, eds.), pp. 123-129, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.

 

Geyer, P. K., Green, M. M., and Corces, V. G. (1988). Reversion of a gypsy-induced mutation at the yellow (y) locus of Drosophila melanogaster is associated with the insertion of a newly defined transposable element. Proc. Natl. Acad. Sci. USA 85, 3938-3942.

 

Bishop, J. G., and Corces, V. G. (1988). Expression of an activated ras gene causes developmental abnormalities in transgenic Drosophila melanogaster. Genes Dev. 2, 567-577.

 

Geyer, P. K., Richardson, K. L., Corces, V. G., and Green, M. M. (1988). Genetic instability in Drosophila melanogaster: P element mutagenesis via gene conversion. Proc. Natl. Acad. Sci. USA 85, 6455-6459.

 

Parkhurst, S. M., Harrison, D. A., Remington, M. P., Spana, K., Kelley, R. L., Coyne, R. S., and Corces, V. G. (1988). The Drosophila su(Hw) gene, which controls the phenotypic effect of the gypsy transposable element, encodes a putative DNA binding protein. Genes Dev. 2, 1205-1215.

 

Spana, C., Harrison, D. A., and Corces, V. G. (1988). The Drosophila melanogaster suppressor of Hairy-wing protein binds to specific sequences of the gypsy retrotransposon. Genes Dev. 2, 1414-1423.

 

Geyer, P. K., Green, M. M., and Corces, V. G. (1988). Mutant gene phenotypes mediated by a Drosophila melanogaster retrotransposon require sequences homologous to mammalian enhancers. Proc. Natl. Acad. Sci. USA 85, 8593-8597.

 

Hoffman, E. P., Gerring, S. L., and Corces, V. G. (1987). The ovarian, ecdysterone and heat shock responsive promoters of the Drosophila melanogaster hsp27 gene react very differently to perturbations of DNA sequence. Mol. Cell. Biol. 7, 973-981.

 

Parkhurst, S. M., and Corces, V. G. (1987). Developmental expression of Drosophila melanogaster retrovirus-like transposable elements. EMBO J. 6, 419-424.

 

Geyer, P. K., and Corces, V. G. (1987). Separate regulatory elements are responsible for the complex pattern of tissue specific and developmental transcription of the yellow locus in Drosophila melanogaster. Genes Dev. 1, 996-1004.

 

Hoffman, E., and Corces, V. (1986). Identification of cis-acting regulatory sequences by P element-mediated germline transformation of Drosophila embryos. In "Biotechnology for solving agricultural problems", pp. 155-165 (P. C. Augustine, H. D. Danforth, and M. R. Bakst, eds.), Martinus Nijhoff Publishers, New York.

 

Parkhurst, S., and Corces, V. (1986). Interactions among the gypsy element and the yellow and suppressor of Hairy-wing loci in Drosophila melanogaster. Mol. Cell. Biol. 6, 47-53.

 

Hoffman, E., and Corces, V. (1986). Sequences involved in temperature and ecdysterone-induced transcription are located in separate regions of a Drosophila heat shock gene. Mol. Cell. Biol. 6, 663-673.

 

Marlor, R. L., Parkhurst, S. M., and Corces, V. G. (1986). The Drosophila melanogaster gypsy transposable element encodes putative gene products homologous to retroviral proteins. Mol. Cell. Biol. 6, 1129-1134.

 

Parkhurst, S. M., and Corces, V. G. (1986). Mutations at the suppressor of forked locus increase the accumulation of gypsy-encoded transcripts in Drosophila melanogaster. Mol. Cell. Biol. 6, 2271-2274.

 

Parkhurst, S. M., and Corces, V. G. (1986). Retroviral elements and suppressor genes in Drosophila. BioEssays 5, 52-57.

 

Geyer, P. K., Spana, C., and Corces, V. G. (1986). On the molecular mechanism of gypsy-induced mutations at the yellow locus of Drosophila melanogaster. EMBO J. 5, 2657-2662.

 

Gonzalez-Villasenor, L. I., Burkoff, A. M., Corces, V., and Powers, D. A. (1986). Characterization of cloned mitochondrial DNA from the teleost Fundulus heteroclitus and its usefulness as an interspecies hybridization probe. Can. J. Fish. Aquat. Sci. 43, 1866-1872.

 

Mozer, B., Marlor, R., Parkhurst, S., and Corces, V. (1985). Characterization and developmental expression of a Drosophila ras oncogene. Mol. Cell. Biol. 5, 885-889.

 

Parkhurst, S., and Corces, V. (1985). forked, gypsys and suppressors in Drosophila. Cell 41, 429-437.

 

Guerrero, I., Villasante, A., Corces, V., Diamond, L., Altman, R., and Pellicer, A. (1985). Activation of c-ras oncogenes is associated with tumor induction in experimental animals. Prog. Med. Virol. 32, 72-85.

 

Guerrero, I., Villasante, A., Corces, V., and Pellicer, A. (1985). Loss of the normal N-ras allele in a mouse thymic lymphoma induced by a chemical carcinogen. Proc. Natl. Acad. Sci. USA 82, 7810-7814.

 

Guerrero, I., Villasante, A., Corces, V., Meyer, A., and Pellicer, A. (1984). Carcinogenic agents activate in vivo mouse c-ras oncogenes. In "Genetic Variability in Response to Chemical Exposure", pp. 229-241 (G. S. Omenn and H. V. Gelboin, eds.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.

 

Guerrero, I., Villasante, A., Corces, V., and Pellicer, A. (1984). Somatic mutation activates a c-k-ras oncogene in mouse lymphomas induced by c-radiation. Science 225, 1159-1162.

 

Corces, V., and Pellicer, A. (1984). Identification of sequences involved in the transcriptional control of a Drosophila heat shock gene. J. Biol. Chem. 259, 14812-14817.

 

Hoffman, E., and Corces, V. (1984). Correct temperature induction and developmental regulation of a cloned heat shock gene transformed into the Drosophila germline. Mol. Cell. Biol.4, 2883-2889.

 

Corces, V. G., Pellicer, A., Mei, S.-Y., Axel, R., and Meselson, M. (1982). Approximate localization of sequences controlling transcription of a Drosophila heat shock gene. In "Heat Shock: from Bacteria to Man", pp.27-34 (M. Schlesinger, A. Tissieres, and M. Ashburner, eds.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.

 

Villasante, A., Corces, V. G., Manso-Martinez, R., and Avila, J. (1981). Binding of microtubule protein to DNA and chromatin: possibility of simultaneous linkage of microtubule to nucleic acid and assembly of the microtubule structure. Nucl. Acids Res. 9, 895-908.

 

Keene, M. A., Corces, V. G., Lowenhaupt, K., and Elgin, S. C. R. (1981). DNAse I hypersensitive sites in Drosophila chromatin occur at the 5' ends regions of transcription. Proc. Natl. Acad. Sci. USA 78, 143-146.

 

Holmgren, R., Corces, V. G., Morimoto, R., Blackman, R., and Meselson, M. (1981). 5' sequences of three Drosophila heat shock genes. Proc. Natl. Acad. Sci. USA 78, 3775-3778.

 

Corces, V. G., Pellicer, A., Axel, R., and Meselson, M. (1981). Integration, transcription and control of a Drosophila heat shock gene in mouse cells. Proc. Natl. Acad. Sci. USA 78, 7038-7042.

 

Corces, V. G., Manso, R., de la Torre, J., Avila, J., Nasr, A., and Wiche, G. (1980). Effects of DNA on microtubule assembly. Eur. J. Biochem. 105, 7-16.

 

Corces, V. G., Holmgren, R., Freund, R., Morimoto, R., and Meselson, M. (1980). Four heat shock proteins of Drosophila melanogaster coded within a 12 kb region in chromosome subdivision 67B. Proc. Natl. Acad. Sci. USA 77, 5390-5393.

 

Corces, V. G., and Avila, J. (1978). Interaction of contractile proteins with DNA. Eur. J. Biochem. 83, 529-535.

 

Corces, V. G., Salas, M. L., Salas, J., and Avila, J. (1978). Binding of microtubule proteins to DNA. Specificity of the interaction. Eur. J. Biochem. 86, 473-479.

 

Wiche, G., Corces, V. G., and Avila, J. (1978). Preferential binding of hog brain microtubule associated proteins to mouse satellite versus bulk DNA preparations. Nature 273, 403-405.

 

Catalan, R. E., Castillon, M. P., Corces, V. G., and Avila, C. (1977). In vivo regulation of adipose tissue protein kinase by adenosine 3,5'-monophosphate-mediated glucagon stimulation. Biochem. Biophys. Res. Commun. 74, 279-284.

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